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   "source": [
    "#Table of Contents\n",
    "* [1. Jupyter Project at Bryn Mawr: Help](#1.-Jupyter-Project-at-Bryn-Mawr:-Help)\n",
    "\t* [1.1 Changing your password](#1.1-Changing-your-password)\n",
    "\t* [1.2 Sharing your notebooks](#1.2-Sharing-your-notebooks)\n",
    "\t* [1.3 Copying shared notebooks](#1.3-Copying-shared-notebooks)\n",
    "\t* [1.4 Enabling other languages](#1.4-Enabling-other-languages)\n",
    "\t\t* [1.4.1 Enable Calico Scheme kernel](#1.4.1-Enable-Calico-Scheme-kernel)\n",
    "\t\t* [1.4.2 Enable Python 3 kernel](#1.4.2-Enable-Python-3-kernel)\n",
    "\t\t* [1.4.3 Enable Calico kernel](#1.4.3-Enable-Calico-kernel)\n",
    "\t\t* [1.4.4 Enable Julia kernel](#1.4.4-Enable-Julia-kernel)\n",
    "\t\t* [1.4.5 x Enable Octave (Matlab) kernel](#1.4.5-x-Enable-Octave-%28Matlab%29-kernel)\n",
    "* [2. Installing extensions](#2.-Installing-extensions)\n",
    "\t* [2.1 Spell Checking](#2.1-Spell-Checking)\n",
    "\t* [2.2 Document Tools](#2.2-Document-Tools)\n",
    "\t* [2.3 Cell Tools](#2.3-Cell-Tools)\n",
    "\t* [2.4 Easy install of notebook extensions](#2.4-Easy-install-of-notebook-extensions)\n",
    "* [3. Learning about...](#3.-Learning-about...)\n",
    "\t* [3.1 Notebook](#3.1-Notebook)\n",
    "\t* [3.2 Python](#3.2-Python)\n",
    "* [4. Known issues](#4.-Known-issues)\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# 1. Jupyter Project at Bryn Mawr: Help"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Welcome to the Jupyter Project at Bryn Mawr College. Jupyter is an interface to write executable documents, reproducible research, documents with visualizations, and just explore computation.\n",
    "\n",
    "You can log into Jupyter here: https://athena.brynmawr.edu/jupyter\n",
    "\n",
    "Below you will find some help on getting started with Jupyter at Bryn Mawr College."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## 1.1 Changing your password"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Start a Terminal:\n",
    "\n",
    "From the dashboard, select New -> Terminal\n",
    "\n",
    "Type:\n",
    "\n",
    "```bash\n",
    "passwd\n",
    "```\n",
    "A new password should have numbers and letters, composed of more than just dictionary words, and be of sufficient length. It may take more than one try to create a good password.\n",
    "\n",
    "Note: the characters of passwords (nor any indication that you have pressed a key) will show up as you type."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## 1.2 Sharing your notebooks"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "First, make a folder in your root directory:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "! mkdir ~/public_html"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Next, make it readable by all:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "! chmod a+r ~/public_html"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Finally, make the readability \"sticky\" so that all files created here will be readable by all:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "! chmod g+s ~/public_html"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## 1.3 Copying shared notebooks"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "! mkdir ~/Incoming"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "! chmod a+w ~/Incoming"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# 3. Learning about..."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## 3.1 Notebook"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Some resources for learning about how to edit Jupyter Notebooks:\n",
    "\n",
    "1. [Jupyter Notebook Users Manual](https://athena.brynmawr.edu/jupyter/hub/dblank/public/Jupyter%20Notebook%20Users%20Manual.ipynb)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## 3.2 Python"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Some good resources on learning Python in notebooks:\n",
    "\n",
    "1. http://mbakker7.github.io/exploratory_computing_with_python/"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# 4. Known issues"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "1. None currently"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<div id=\"disqus_thread\"></div>\n",
    "    <script type=\"text/javascript\">\n",
    "        var disqus_shortname = 'calicoproject'; // required: replace example with your forum shortname\n",
    "        (function() {\n",
    "            var dsq = document.createElement('script'); dsq.type = 'text/javascript'; dsq.async = true;\n",
    "            dsq.src = '//' + disqus_shortname + '.disqus.com/embed.js';\n",
    "            (document.getElementsByTagName('head')[0] || document.getElementsByTagName('body')[0]).appendChild(dsq);\n",
    "        })();\n",
    "    </script>\n",
    "    <noscript>Please enable JavaScript to view the <a href=\"http://disqus.com/?ref_noscript\">comments powered by Disqus.</a></noscript>\n",
    "    <a href=\"http://disqus.com\" class=\"dsq-brlink\">comments powered by <span class=\"logo-disqus\">Disqus</span></a>"
   ]
  }
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